If you use Bohrium through Python, we strongly recommend to install Bohrium through pypi, which will include BLAS, LAPACK, OpenCV, and OpenCL support:
pip install --user bohrium
In order to install Bohrium on Ubuntu, you need to install the
python-pip package AND its recommends:
apt install --install-recommends python-pip
To use Anaconda, simply install the Bohrium PyPI package in an environment:
# Activate the environment where you want to install Bohrium: source activate my_env # Install Bohrium using pip pip install bohrium
$PATH. E.g. on Ubuntu install the build-essential package:
sudo apt install build-essential.
Install From Source Package¶
Visit Bohrium on github.com and download the latest release: https://github.com/bh107/bohrium/releases/latest. Then build and install Bohrium as described in the following subsections.
Install dependencies, which on Ubuntu is:
sudo apt install build-essential python-pip python-virtualenv cmake git unzip libboost-filesystem-dev libboost-serialization-dev libboost-regex-dev zlib1g-dev libsigsegv-dev
And some additional packages for visualization:
sudo apt-get install freeglut3 freeglut3-dev libxmu-dev libxi-dev
Build and install:
wget https://github.com/bh107/bohrium/archive/master.zip unzip master.zip cd bohrium-master mkdir build cd build cmake .. -DCMAKE_INSTALL_PREFIX=<path to install directory> make make install
The default install directory is
To compile to a custom Python (with valgrind debug support for example), set
-DPYTHON_EXECUTABLE=<custom python binary>.
Finally, you need to set the
LD_LIBRARY_PATH environment variables and if you didn’t install Bohrium in
$HOME/.local/lib your need to set
PYTHONPATH as well.
LD_LIBRARY_PATH should include the path to the installation directory:
export LD_LIBRARY_PATH="<install dir>:$LD_LIBRARY_PATH"
PYTHONPATH should include the path to the newly installed Bohrium Python module:
export PYTHONPATH="<install dir>/lib/python<python version>/site-packages:$PYTHONPATH"
Check Your Installation¶
Check installation by printing the current runtime stack:
python -m bohrium --info